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Cell Ranger ATAC 2.2.0 (Apr 30, 2025)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 661 MB
    md5sum: c616198bd9aaca393f99c71e07ae46b6
    curl -o cellranger-atac-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.2.0.tar.gz?Expires=1774631705&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=I3fXhk9u~UzqAsy0o0V8HtRBwI5sEa8rfcDq8BaYFsInoir2djCX6l~dEV65vx2WVSBd6bvGV-mWVlsnsA9MCTYDrI4Hfn4CeSrqhZbifzxh0dasTiuoHMxFUd8uBC7gEWDA6OK04jC2JxMgm9QmvCHARKDnJajBOtGo5Dfq8AMZn4Tq7T39R7c9LsnHN18C7166wRXkyC7LVAm-2Lbcf~FV6LpzEFed~qQYZMVG7EaUAjDe6TTwwtrP9BId0H~~OUOpkkgF7-TqES8iSSmumtIX-UtMEfX4lVBo5R1RjxvCQtg0Yi6O184ElDuQxiAVz~BR2-EXMSHynytfpkJIyQ__"

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Cell Ranger ATAC 2.2.0 highlights

  • The 20,000 total cell limit has been removed from cellranger-atac pipelines, enabling the analysis of large datasets
  • Strand information is now included in the fragments.tsv file for easier downstream analysis
  • The --nosecondary parameter is now enabled for count and aggr pipelines
  • Minor performance improvements
Release notes

Cell Ranger ATAC 2.1.0 (Apr 4, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 528 MB
    md5sum: 3f44ba66ae789c2ab03f9c380a6718ca
    curl -o cellranger-atac-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.1.0.tar.gz?Expires=1774631705&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=M6vaQZtC8VWuebninhaZUn1mLmyCMoKPpq1gtu2WWYhC7dg7yazJCuugFFEe8bS7wJqFRXwTWv21HR-bx4Yb9BfnZY6O62bZ5QQaRMOEU~cRaU9o1fg-H6qJ63bfR9S0-qui2LMX0U-e~412ZwB2wnLEea3LDj3w8YqypIuYc0LsdSd~ZC8B3VpTw9Wnl~EmX6XJn2gUfj09m56axMRKJgfeasNp6JRexpBEE6KPq6RHf0OJQ9PTSHaT232-Xfm9wVfduRd3aCIdR5HQnT-08-PcJrNrA1z5lkSUhFquEeAhsmv~1BLjmx-PTfAh3U4LHJmSTq5oyZzDKf1~pvxNEA__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.1.0 highlights

  • Added a batch correction algorithm to `cellranger-atac aggr`
  • Minor cell calling improvements
  • Added UMAP as an alternate projection
Release notes