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Previous Versions

Cell Ranger ATAC 2.2.0 (Apr 30, 2025)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 661 MB
    md5sum: c616198bd9aaca393f99c71e07ae46b6
    curl -o cellranger-atac-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.2.0.tar.gz?Expires=1774637656&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=eKt-JDJrQSODMOmFpjqStWe6EcJp8fNtfc7vZMvKzi4LzLob3BfUshQJjZUJ4OgGKPSITZad12rLYA9X1DK~ot5pwHjmapFynmBISn58d3KRW52PBGqaF2tEuA3R-9OH1oqg9Dx3cuCeM~YmJPjTjhYAMwqWbgl3jo75JUj8Yx3g0IeM~5ZybT-ydpLBflsbavPhB31AZ~EYxqXVMu2gA3PyPkspdJTXh6QKvox~bD1ky~1boFutaL~QiMFRQGqjZCy6nzw8IgOn5Zvwlj7x~hCLRODH731GV6ThlevwYtM9w-CmZZxsRZFeA9svKVbDr43-p5uUjdjgvSbRnUI5tg__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.2.0 highlights

  • The 20,000 total cell limit has been removed from cellranger-atac pipelines, enabling the analysis of large datasets
  • Strand information is now included in the fragments.tsv file for easier downstream analysis
  • The --nosecondary parameter is now enabled for count and aggr pipelines
  • Minor performance improvements
Release notes

Cell Ranger ATAC 2.1.0 (Apr 4, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 528 MB
    md5sum: 3f44ba66ae789c2ab03f9c380a6718ca
    curl -o cellranger-atac-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.1.0.tar.gz?Expires=1774637656&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=niJqVrWuP3UFknduzy9n20SWOVdNG25UNQWuCU3Dc0wIPepHq4uT8RI7AaZ-6S5IhspeiTAipNuEy7Y~aDOdSibv8qaFUwbdEm6LftuB~DHfYYAYz6ehbOXvKYhc2bocJebvacgT~5Y-eC5-dv5j~Di9gpb0gbbSeag3Im1gG0l07kn0OoRmL1PCzteRcEFW1iVEuSx1eC~zt2AsBDGwFR35XlXwKTDrWWam0rFS60pnS5Oau0cqjbgCzPyDj8rZOC5PRFDd8qeQBXAjUVaxSUomalKmii331FM1fFUj2Z3QLVrYhL44OlTxj7ZoSuTMvCFkBevdFQ4uHb-6-EwGlA__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.1.0 highlights

  • Added a batch correction algorithm to `cellranger-atac aggr`
  • Minor cell calling improvements
  • Added UMAP as an alternate projection
Release notes