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Previous Versions

Cell Ranger ATAC 2.2.0 (Apr 30, 2025)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 661 MB
    md5sum: c616198bd9aaca393f99c71e07ae46b6
    curl -o cellranger-atac-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.2.0.tar.gz?Expires=1774630907&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=bsTt0vIL9iVxlKeQMHd9uDyQ6tp8kWAKj2Uxo8leXT9wgDanz1eP9R1huuq4OVpklZrBo69DYzFGH7n9gh6OnYsB828cnoAsTDgSPLnUizqaJaGCj-7hPw~ULLKUbWr7Gd3h7IQ6lZsX3ymsWgPRRMonh~5cqr76q8vMqVDdR5pPl8UhVSZOsYhb1UXo6cTmSmqb8190fujpWs2hH5d-aHZEkbj3Qmlv0a2e0qlEYqUqXkrEuC~eXPomx~Wk7PTMb0dOR~rvF0zUkGgltPeFx82DVLGeP-BFc30kYD-impUdcBEttnIXywrBautjxHxf1fLPIKWijtDrlpYU~Tygqg__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.2.0 highlights

  • The 20,000 total cell limit has been removed from cellranger-atac pipelines, enabling the analysis of large datasets
  • Strand information is now included in the fragments.tsv file for easier downstream analysis
  • The --nosecondary parameter is now enabled for count and aggr pipelines
  • Minor performance improvements
Release notes

Cell Ranger ATAC 2.1.0 (Apr 4, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 528 MB
    md5sum: 3f44ba66ae789c2ab03f9c380a6718ca
    curl -o cellranger-atac-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.1.0.tar.gz?Expires=1774630907&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=l-Q1ma0JJFKApnpmmTWimcQfH0i~dpMoVupHg9NNMbuqlgPJ8RTplpviF4a2FqaxV-pe-nWl-rTAptnrXZ-IwbZ-EWlGOcCTwr7NUlQ16DFmXojKWoIwl0E6CdnzZfHU9lNSkdDp4mnN2Bdc~9-0RJk7bu-FlK0Ok6R5kW5IbihlZ8SS7ugJ3YBLGHMq5leBPgY3J1GlynroKwa-ls7PB0htG6UmDPjDrpyZxilymnMLTwAtPc~1TdN79NG7iyl723I4OTC~ERDcpoxyw0N-p4OmOR-NIg1R5u~AWGz-ebpurcmn~d9coBrEnE1ccpour0gG3MwGMEYa4ccU3eOt2w__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.1.0 highlights

  • Added a batch correction algorithm to `cellranger-atac aggr`
  • Minor cell calling improvements
  • Added UMAP as an alternate projection
Release notes