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Previous Versions

Cell Ranger ATAC 2.2.0 (Apr 30, 2025)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 661 MB
    md5sum: c616198bd9aaca393f99c71e07ae46b6
    curl -o cellranger-atac-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.2.0.tar.gz?Expires=1774637651&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=awDqCAy4vnga6cO~u0RcENrav8HIvYFYXyoMVJRvG-zZIeTnbWWDZzHaxUH6hT3uX2~sNYBWzxl5uGZwbUUJkZEhd~Xig~H1QTQuzu9x1mwtdWnm~cW-goM6YF5Ou5PQWn1YcyQDmUiD3WAMOfkNtKecDArtPuk4ZZBbuECQmcb4d-ux9OUDzdHLKbw-79UKCdg2VVa6EawOKO6m6FRBmwyF~KVrWD4skUL2LF~sySeJ8HaV3ilvyHuMl9PCYXZQEKTtT1hjEazAFaLBM9WkwADrs2yVWmNFfEGGXAhKQmQwaRqzdbR8oDAzknAzRq0eNoi9XtAUruWRK61rh1isoQ__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.2.0 highlights

  • The 20,000 total cell limit has been removed from cellranger-atac pipelines, enabling the analysis of large datasets
  • Strand information is now included in the fragments.tsv file for easier downstream analysis
  • The --nosecondary parameter is now enabled for count and aggr pipelines
  • Minor performance improvements
Release notes

Cell Ranger ATAC 2.1.0 (Apr 4, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 528 MB
    md5sum: 3f44ba66ae789c2ab03f9c380a6718ca
    curl -o cellranger-atac-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.1.0.tar.gz?Expires=1774637651&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=NHnlTvW2S4VecW2YYy7ScHYLU5eUPzgILc5oVh8k8i868JYyR90uyrTKiwxNzNMmXG-WSWsxZcn28F6lEulTWNSN0UErruBmqTLq4JKDvHweT5PIjOGboYpmK7z1~2TDJvkxZdwr2cfFP0IBfDhjowCqgEQ-2TFSnMTIoI9ry~SqqmG2iZBDp0Zqx1dqOMwuLTXMyjiEg-xbzeDlM5SVerQ~411OhhlwR-mFxDO4MXYtR8IR84FZh5yvi3Lw2NtEJuz3W9rVUfg0uM7IhmErgC3UcHimDvgwc~CARWaVTR8CnfGGdq-4s~3n-N9Aas0CuLgcGNhKWkExPlQeICtnCQ__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.1.0 highlights

  • Added a batch correction algorithm to `cellranger-atac aggr`
  • Minor cell calling improvements
  • Added UMAP as an alternate projection
Release notes