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Previous Versions

Cell Ranger ATAC 2.2.0 (Apr 30, 2025)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 661 MB
    md5sum: c616198bd9aaca393f99c71e07ae46b6
    curl -o cellranger-atac-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.2.0.tar.gz?Expires=1774638160&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=IjIDw7M2ZmtgCx--eVMtjlfpOj1EuuYG9OfXz7OERejJ-rvICYoZP-SF9hrSE8XJyRPlmLq19GtDFyJpc9zCEbhH5UX9ovtjCNqy0CvG5BoBIR9eB8zxyZ93xeEAZcc5yOu3LhpYWGbW6JhtkuSZ-dvKo776yDitGQvMHSCAi2QjGXDyB1h72s1wMIhhdAdTBA2eSmBk8UG3DHQSNbA80tuIxC6Njrn9OzrIt-HgJzUUSVhNoKvrDWQG3Rfnbe6R5sMmapd~vJveetlQKv4HPn-2OF3QLGRkndfY5OPlxcClY~0K9yuWDxkuhYJ8ZIpLLXSTctVuWXiBt2duWjvrnw__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.2.0 highlights

  • The 20,000 total cell limit has been removed from cellranger-atac pipelines, enabling the analysis of large datasets
  • Strand information is now included in the fragments.tsv file for easier downstream analysis
  • The --nosecondary parameter is now enabled for count and aggr pipelines
  • Minor performance improvements
Release notes

Cell Ranger ATAC 2.1.0 (Apr 4, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 528 MB
    md5sum: 3f44ba66ae789c2ab03f9c380a6718ca
    curl -o cellranger-atac-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.1.0.tar.gz?Expires=1774638160&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=oUCDo9dc0OyJNt7DAvPqCM8D9E3fJtohlyG1Cfml2CuyqSvviVdB6zGja-pgwfAAqb4IgGsnm-RyfBLHODAScZ~IdUL82xqeR5lBW~-QnPnXO57a68pYpMSENHTDcb7aQaxYDx6lUCVHjnfiI21KyNghPEBhVCcBz4bZEYpC49aJxOmdL6z0gwWWLd-r6HugNono3RWXSappqtMqrVRLUAqT2~RuFk0~lsPmR6Ft6qxIjMHQok4q5GV5zkugS6H0Fr4IVO2F8HWB~KXJgEo2YyW-kpl6iGgEX9nXtgI7tG-plAdiTTNis9Ykcv5Nge18CXDDATAfrgoohyfY7PqHbA__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.1.0 highlights

  • Added a batch correction algorithm to `cellranger-atac aggr`
  • Minor cell calling improvements
  • Added UMAP as an alternate projection
Release notes