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Previous Versions

Cell Ranger ATAC 2.2.0 (Apr 30, 2025)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 661 MB
    md5sum: c616198bd9aaca393f99c71e07ae46b6
    curl -o cellranger-atac-2.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.2.0.tar.gz?Expires=1774637563&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=GQehdLM2tQTNb7V3eLYLEt-pMtutP3cXiUIVj~es97~PM0pln-3YguwlFsSmfhx5s2WvEe6GFZA1eUiNlaYwp5bx2aoy6xSo1YSyu0QEINCsoXGrU1g9pk~eXmJcACq-nDnK3cGcn9W91LbASsj5kj2macqD6q~Fa5IxHHy3kbaSL-hnzLHUPyePZqpR9N7fh9EIIXgPwt05xDt2mBzam5nILodYp4Dl-W9EXTORtpPkZvFyQpASF5omJ8pOZC~qZjQOiP3esGtnMNojqBg3Y1eQiHCHEexCv7RHJj4eM9X8lmDiqTHZT6xRux8UnzwDuuYp5z7acjbAlWEiZLXjQQ__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.2.0 highlights

  • The 20,000 total cell limit has been removed from cellranger-atac pipelines, enabling the analysis of large datasets
  • Strand information is now included in the fragments.tsv file for easier downstream analysis
  • The --nosecondary parameter is now enabled for count and aggr pipelines
  • Minor performance improvements
Release notes

Cell Ranger ATAC 2.1.0 (Apr 4, 2022)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 528 MB
    md5sum: 3f44ba66ae789c2ab03f9c380a6718ca
    curl -o cellranger-atac-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.1.0.tar.gz?Expires=1774637563&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=iwGSue9b8fbl27wkbjuy3vq3pnSHWNYoZssi7TvRwi~8urVgddRAJztPd4Z-fxmGjNFWRTloS3y8uB0Sj8m5Z-sv1ILPQVcYpp5yCDE01GRnnqnoe5XKey9Qx-iKyRSebsF~IzjyMOFK9IChx6GaRN0KBy7drOT~~AtC8DWTl9N8T0ZIqKNVBcoMPsTuGpkWWUtmNCPCH5DzWbPXnwS2hryUMzobG6MRN5RHYvjLGdVJWgPWDAm5Ist5lMLowJuEss5se8TDrtPhs4jLKS-U96xm6j-spG58lhzhjlzM01V~iezQ522Rv-CMpilaNOlEks5rXUY0T1YOKB-q9ZXbYQ__"

Download is unavailable on mobile devices.

Cell Ranger ATAC 2.1.0 highlights

  • Added a batch correction algorithm to `cellranger-atac aggr`
  • Minor cell calling improvements
  • Added UMAP as an alternate projection
Release notes