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Previous Versions

Xenium Ranger 4.0.0 (Sep 2, 2025)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 3.5 GB
    md5sum: c063db33f59ac7df642ca6b8d3ae6adc
    curl -o xeniumranger-4.0.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-4.0.0.tar.gz?Expires=1774635846&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=bZxFHBV4qVtrNkbH0IR05aLDMTs6c~WtQ1nqz2x4qdkxAOj~FHuLrZMOTJYnQoj7RtVxv6ADyYCBfEyg9cW84tIItar2WhZfiSHRWxGcQonppvuHNwXGu2enkrY-POXTdoL8rE4a8DyM03IxW5zXan-OujfzbnAmQ-G5HRQ8yLGATIM16k6VfvOAoY7iv1-NarYmWFEtusG1nQ~vbwvCkI64b25p29Dn~IKQsB790DvT8jenA~d3NvGbyPM89-wDqez5DiTFOZHd74pRY8sTWgiLNB2ov-QqaE7u3bfCkQw3tKkdCTSb~lGND9RPwmOiUCqu3nnOhCHEwnv1aUkesg__"

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    Download for Linux 64-bit (tar.xz)
    File size: 2.3 GB
    md5sum: 3a1636bd176257c0edad991660b13bfd
    curl -o xeniumranger-4.0.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-4.0.0.tar.xz?Expires=1774635846&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=oQgJglmfMTEn6MHkVsn3LfBNfuUU7hFcEloXIcWHsQTNMCaqGcw1WyZU-GQsia5VKds7Xa1B9PP9fmzdJtKFqQHJvBqFrtAGHbnWegj1xI8IYC8no0-ACewKjYRpgnhv1V7chiLf-JQ~Oprj14-4l4nECfhHMcqYOrZbbz9yQb7lnJhwAXmpfOq33W07dxTh5MuDznyxCbnDPsO9xX0G1otdN~0iUV1Rz1eJjvM1cJ~n3lP8edOosqk~iRUCeJDYhGJezMud1t3fPJ8jt7XcwW-NDc5loDza0sZFpwPB1QxIE8ozAuE8HaSJ15acNGB0HXtVJ5QBI6-5fI5Ugyx8vg__"

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Xenium Ranger 4.0.0 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to XOA v4.0.
  • Segment previously un-segmentable large cells with the new large cell segmentation feature.
  • Substitute a boundary or interior stain with a Xenium Protein image for multimodal cell segmentation.
  • Map cell IDs between a Xenium Ranger output and the imported segmentation to join metadata for a third-party analysis.
  • And more - see full release notes.
Release Notes

Xenium Ranger 3.1.1 (Mar 11, 2025)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: 38c202b0fd5ea38522627e9df129a873
    curl -o xeniumranger-3.1.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.1.1.tar.gz?Expires=1774635846&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=WsgIFL5mqESuRU4jmKGsnsAXi-RLE6fOtR7HkY0rQ~-1vpGro2bXDVyi3g7dkORf0FrMADYgtnE2Rc33OgeUeVY2zmJYb7J0vDAGdAk4nYU-9bM9nnkRAyC1vaXxLSuHk11Q3HM6-F57RSDHtUIetLl-KER88SpWC~F8NcgTiucNTFixymCiGDrLN8mRo7D697mku09iPZcMXn2HNf7kPplXWqqapQgdGICLsO29Cfzj0uq-sFIENIOok7wMrpSPoQzYvBzGPgec0ZmRXV7BBmxI6xfsUeRXve31fsuq1xAU3n9jOX6s5M0LxFIynlMPQibcBb4UXOAjX5SOnCYK5g__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.8 GB
    md5sum: c38f7bb506d7675481c55d6555a3694d
    curl -o xeniumranger-3.1.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.1.1.tar.xz?Expires=1774635846&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=UqKGg3fTe9H3uUyeVjIlkoTrnmerEnDB-p5D2J9Jwa3y6mJ3GdD9leyo0FhUCWfNdcXn~Zf1nyyUYuAAMCC5r3V-q1QKCLr1u4-6LX3gjigQhvm3pZyhO5jnJdbpJZtGpI1NLsSBFqGUKPHRSghJ7L2HNQx~Hg0IQft9dDtwa3U1qvSiyE9jUe-qyRpdnPSB1P7-Jgn~0~Km5bkmRMlQ8yGoemsfIYGRgUkV1vuga9TY9NblfcSr6GctZGYnw4ibMBQDhxOkx0ugP23uFM352AhbibMSx8~tKiizLX8qXhJnz-kttiLAcGBc3pm~E7L42tJ~yr-jVTuTwLzTmaBacQ__"

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Xenium Ranger 3.1.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Improved boundary stain cell segmentation.
  • Upgrades file formats to view per-codeword localization plots for custom and boosted genes in Xenium Explorer v3.2.
  • Fixed open polygons bug to enable importing Baysor v0.7.
  • And more - see full release notes.
Release Notes

Xenium Ranger 3.0.1 (Sep 19, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.9 GB
    md5sum: e8e98a0c6b4d5b127bcaf9801bfe3d69
    curl -o xeniumranger-3.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.1.tar.gz?Expires=1774635846&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=jipdujANhJLxw-Tyi4--zvHhZsSpW9nZgKaDWftiYjSbVZy4bqlN75uqYQ8zfeYqLxPu~io0ohmhkLNlBb4~2pcnwC3ayeZaJYF3ou04I6v4JZPeLtTX0YvKf0aG3U~WiYZhozvdj1J-jHA71OVVOL~UFCuwRuxPivNsXsWx7OVLxpPOO3N~NhVK8h7HnHOjqivgH4YALuG2DG9b92sGcKkQHlqKuewEfPiPh8q6JW-w1nt5tHI0dDhq3cUZ6DWnUQazAkbnxERX3d-qJ3zhgFAvV~pSvnhh8yTYTz616K6~VWBQBuMUFARMBiNIiR4BiwDEMJ8ybEH8QqQF~0jh1A__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.7 GB
    md5sum: 276f6073a170c236b76b04fa3919beef
    curl -o xeniumranger-3.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-3.0.1.tar.xz?Expires=1774635846&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=AuL2tDpGePn1ybvIJAKLu3rtLSKJkIRaKOP~Lm~3GNxTjU3-qGqJdjP9sEXn01w6Zz7SKFnaqn-nk2FU6f6xK4aVoEI9jy90rjC~fIc68dIGyXmDajLTQRP8-n5Khrc62rCwOrxS~hmiqL-J-Zz-xVVsB0zh1HxeIpVYjw923ZWHlTypSnyrp0cKvsFRPlD0a5tGOylOuISpx-FM-f6oRdkTarYIpdgIZ02x9gz47wMKhLNIkRtj~uUGwe27Wx7XoyYVU~5NhZFxXA2Dl2MYGXaQnVqNHqonET14tzYasNRpeTfSkS4otUipF13quY~DnEtjwd4lXrCEylmmpXI0aw__"

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Xenium Ranger 3.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Reanalyzed data gets updated scaled transcript view in Xenium Explorer and analysis summary features introduced in XOA v3.0.
  • New rename subcommand for editing the region and cassette names.
  • Robust to corner cases of importing transcript-assignment data with empty cells.
  • And more - see full release notes.
Release Notes

Xenium Ranger 2.0.1 (Jun 10, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.7 GB
    md5sum: 45d207dc432226dc003a31a287f5ec08
    curl -o xeniumranger-2.0.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.gz?Expires=1774635846&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=SUoQ-vuVy~OvwSNt8Uf4DlWuCvNBywZ2fMA5zJJGoIiZyq4UlGW40wWnvcHIhCmKPnWw0wTWSGjezMHe3jS6444lGuJxeO7bAxQjK8hEJdFB9U2vfQzWfZpRU7Cki1ZVv5q6qndjqsNb1X00Rc0ZW9obDs~w92rUDBFsUCQDa~Dz0aO1xg7sBC-6kTJgLrUl8taYRSv2lbRTxk3RaQ1YFyEjf9Cb7h3EIVmw7G8g6gFm1W-cgXz0PiN4xjflPwvYDwjf0Iulkn~lRvQuJk0I9frxPlby59mN~yrqu4bxD8YDMqRDlWdEJRklmtd338Y9XOhJX-oU2HNs97JldGv7nA__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.6 GB
    md5sum: 244bdbb3d159ff557a7747c03ec487a7
    curl -o xeniumranger-2.0.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-2.0.1.tar.xz?Expires=1774635846&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=hCpqhGfanKqgyV8UpLOkC4wz~Pd9H5ewZZUUM0e8Vq2lYywfJAvXzOW7a6Pz6WKUpnQ8XzHNbgRlc1spDQtT8b6WATGLlUkbErmMLJlHuxAjZbx0OsmAL34MFkCSn1A9r4K27S0eQr-G8jFgMSEaLP6Z87HyTffayre4MQz4qGS1J00jAtV3e8xSpJoZTlgYbHAjFlWWMuzsj7J5WYN7DAfoiII-aCiGpfuvmfRZW~cqyy7UtyuNzUnVauexgmOJqG8Poxq-4Qg1COmb7K-CuAilx31mnQ~m59dz-k78kt7cgCi1mPS43ImGIxFmhiu8IZfPBvYy~H~Bxd3ZgD5v5w__"

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Xenium Ranger 2.0.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to the latest version.
  • Default nuclear expansion distance is 5 µm.
  • Enables reanalysis with multimodal cell segmentation algorithm.
  • Interrupted runs can be resumed.
Release Notes

Xenium Ranger 1.7.1 (Jan 23, 2024)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: 51c373964e46c041e08ba73888657edd
    curl -o xeniumranger-1.7.1.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.gz?Expires=1774635846&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=nWyLBeUns3eosCTRgEDgZCcOjrQ1FW0xBtFdlMUeJhqTKwTLN7wS1v16pD2~-OLp~fdJzniic~N3HCUxepvoEqJyb7b3hEns9QUSdHxKM5d-dZmK3f0jSUllrDetEytI6hwVrIU6NL4B4TWaBQLhyx5xK~2iym1oPianFlmbHxhdrFlRh5p~vd6QZUuKDH~O6hexrTdyZ-h88lnuvZEgtM-DcDlj5mH5l1V55fNX~I7M1Q4~RS7FOngdx85JzdEtarXqTOrBpRUPxmZ4lDvMEHAvn1dbkSeSuW5yXAh9w4a5XzNuB7l~dnWXPQ~2K3JBwAnUidkpY~IPgrEc1Smp2w__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 43e6e4433303aae30973682dc5219f20
    curl -o xeniumranger-1.7.1.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.7.1.tar.xz?Expires=1774635846&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=LSxEdjYYMG-oyissl3fXSEtCSLxPnWjyfWLaQmKnyc9C9rLCXozEJeWSxP243M7-jL8OsjqrcyeW~mEdAa7z5t4ymv5hEbEPu-gxeBO79TawYQb2A3erxbOXSHq4uDfsC6pC0LLzEnbSV6yVgV530J4-LRLa7flRb2EkZ~VKaOmFlE0uwxRrjc7RT~SBAKPUBlnDxWjp4A5QLGYVcRF94G0trBlyWnAZTwz3QkpESzK4jAitgw23y1mpDmbcLmAeF~EgJCns-XnrbPLjNfpSZf9JdTroeo9Z9Lul3gwSVsuLEvXNRIomgzMMcpGlXo2S-rPsagcLkcVPPm27Z5eM-w__"

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Xenium Ranger 1.7.1 highlights

  • Supports reanalysis of Xenium Onboard Analysis data up to latest version.
  • Image-based import-segmentation now compatible with segmentation masks.
  • Improved memory usage in the import-segmentation pipeline.
Release Notes

Xenium Ranger 1.6.0 (Aug 17, 2023)

  • tar.gz compression

    Download for Linux 64-bit (tar.gz)
    File size: 2.58 GB
    md5sum: ebd970ceafc057668b9e664df310a5fb
    curl -o xeniumranger-1.6.0.tar.gz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.gz?Expires=1774635846&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=Q02pBdwxAfUIUkKSfVuuMnd6z2erKo8D7nzjPpB2ylcKwcpxJUIfZLC0wH55stbRz88cnq6lrnMB7NCbjGALOTApAr3SDPmQ782iguEo00KdOCRZHtsszF5Vr5rvgWCwOr2FWBkh8ZMtXgWiLIPhRLsfAgAJFfZwDo46OHLOYLpwQArdqlpIv1AJz1mqOJqXng44jX1ooEO9pqxRRksOQRf4Kfs9ZyklQvOfuRIBG3wyq5mydwvSXnwUHmIE6f0pBt0LLkDLwdRLUd5TrxYwXof3zWa5t71UHlB8A0Gj89gvBfuG01iTjM1ZchEgSGT8--A2~5080Q9nO-2cRZGBsg__"

  • tar.xz compression

    Download for Linux 64-bit (tar.xz)
    File size: 1.56 GB
    md5sum: 6fa799cfeef91264fdc174ad43b6da3f
    curl -o xeniumranger-1.6.0.tar.xz "https://cf.10xgenomics.com/releases/xeniumranger/xeniumranger-1.6.0.tar.xz?Expires=1774635846&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=bOJ~8Cs0kA5logG2Z0g9N8WJ4aWoqSKOscTiGyqaMCAmse~2jmSgfAgfYXwFRJsTS6RUOab56yVp04TOSWnVJFGJxt0nGYxzQhfexcmD9Is-PQ-IDGr-IzBGa5XqZwLT2xv0-DK2e1kca31SeRdRJYb8X6TLNsnQMef6oJuGSADb-0r5uYMUBmt75fNIeYszs6D~X2oSuqxaBkXeIChDrSnbcCPLAr4pVYZSeqQTqvSsMTq7fPtm6crs~6OBuUaDD9yGlVDJx1aw4SEBxWuF8177uSQvsE96FyxxAVvZsBWSUPdpU43hacq3fQ4NwTNMB2R9ijyaRtZ6Q573UgLEXQ__"

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Xenium Ranger 1.6.0 highlights

  • Initial release of Xenium Ranger!
  • Resegment Xenium data with customizable nucleus expansion distance and the latest 10x cell segmentation algorithm.
  • Import community-developed nucleus and cell segmentations in multiple popular formats (i.e., Baysor).
  • Selected the wrong gene panel when you started the Xenium Analyzer run? Simply fix the mistake by using relabel.
  • All pipelines produce the same output bundle as Xenium Onboard Analysis v1.6, so they are compatible with the same downstream visualization and analysis softwares (e.g., Xenium Explorer).
  • Backwards compatible with all previous Xenium Onboard Analysis versions.
Release Notes